CZ:Ref:DOI:10.1002/hbm.10062: Difference between revisions
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{{cite journal| author=Smith SM| title=Fast robust automated brain extraction | journal=Hum Brain Mapp | year= 2002 | volume= 17 | issue= 3 | pages= 143-55 | pmid=12391568 | {{cite journal| author=Smith SM| title=Fast robust automated brain extraction | journal=Hum Brain Mapp | year= 2002 | volume= 17 | issue= 3 | pages= 143-55 | pmid=12391568 | ||
| url=http://www.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pubmed&tool=clinical.uthscsa.edu/cite&email=badgett@uthscdsa.edu&retmode=ref&cmd=prlinks&id=12391568 | doi=10.1002/hbm.10062 }} | | url=http://www.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pubmed&tool=clinical.uthscsa.edu/cite&email=badgett@uthscdsa.edu&retmode=ref&cmd=prlinks&id=12391568 | doi=10.1002/hbm.10062 }} | ||
:The theoretical basis for the popular [http://www.fmrib.ox.ac.uk/fsl/bet2/index.html FSL BET] package for [[brain extraction]] from [[neuroimaging]] data, with the following basic processing steps: | :The theoretical basis for the popular [http://www.fmrib.ox.ac.uk/fsl/bet2/index.html FSL BET] package for [[Skull stripping|brain extraction]] from [[neuroimaging]] data, with the following basic processing steps: | ||
:#[[Binarization]] of the image based on a threshold estimated from the [[histogram]] | :#[[Binarization]] of the image based on a threshold estimated from the [[histogram]] | ||
:#Determination of [[centre of gravity]] of the binary image and of the radius of a sphere with a volume equivalent to the number of above-threshold voxels | :#Determination of [[centre of gravity]] of the binary image and of the radius of a sphere with a volume equivalent to the number of above-threshold voxels | ||
:#Initialization of a [[tessalation|tesselated]] surface of a sphere with half that radius | :#Initialization of a [[tessalation|tesselated]] surface of a sphere with half that radius | ||
:#[[Surface growing]] until the enclosed volume reaches the size of the full sphere and is [[topological]]ly correct | :#[[Surface growing]] until the enclosed volume reaches the size of the full sphere and is [[topological]]ly correct | ||
Latest revision as of 08:23, 9 September 2024
Smith SM (2002). "Fast robust automated brain extraction". Hum Brain Mapp 17 (3): 143-55. DOI:10.1002/hbm.10062. PMID 12391568. Research Blogging. [e]
- The theoretical basis for the popular FSL BET package for brain extraction from neuroimaging data, with the following basic processing steps:
- Binarization of the image based on a threshold estimated from the histogram
- Determination of centre of gravity of the binary image and of the radius of a sphere with a volume equivalent to the number of above-threshold voxels
- Initialization of a tesselated surface of a sphere with half that radius
- Surface growing until the enclosed volume reaches the size of the full sphere and is topologically correct